PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g10510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 364aa    MW: 39609.6 Da    PI: 6.7719
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g10510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1164.9e-3622119289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec..eaesssssasnsssg. 88 
                      +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++    +  +a+++   ++++    +n+s + 
  Vradi02g10510.1  22 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELppwnP--TATSMqpPQQQEIALRENKSLPa 113
                      79**************************************************************76441..33222223333333333333333 PP

              TCP  89 .....k 89 
                           +
  Vradi02g10510.1 114 eqdptA 119
                      222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-3322131IPR005333Transcription factor, TCP
PROSITE profilePS5136933.0332482IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRAGAGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKTAID ELAELPPWNP TATSMQPPQQ QEIALRENKS LPAEQDPTAF  120
GNRGESNVVV AATRVPEQFS HQQLESENAN IGTSKYTSGP GFLPPSLDTD NIAETIKTFF  180
PVEATTTSFQ SYPPAPPDLR QQDLRLSLQS FQDPIMLQHQ PQSHNEPVLF AGTALGFDGG  240
SAWSEHQNHH SEEHRLLFGG NSGHGGGFVF NTPAPAFGQF FSQRGPLQSS NTPSVRAWID  300
PSVDHHHHNH HYFSPLIHQG SVAGGFSNGG GFSGFRIPAR IQGEEEHDGV SDKPSSASSD  360
SRH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494079.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ9MAH81e-101TCP3_ARATH; Transcription factor TCP3
TrEMBLA0A0S3S9N50.0A0A0S3S9N5_PHAAN; Uncharacterized protein
TrEMBLA0A0L9V3S20.0A0A0L9V3S2_PHAAN; Uncharacterized protein
STRINGGLYMA12G20160.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.14e-74TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3